Sign in at the GST portal, then Returns Dashboard, choose the financial year and the return period, and open GSTR-1. Choose Prepare Offline, then Upload, and select the JSON fynxIQ produced.
The portal takes a few minutes to process it and then shows a summary. Compare that summary against the figures you saw in fynxIQ before you do anything else. They should match exactly; if they do not, something was uploaded that was not what you prepared.
Then generate the summary, review Tables 4 to 14 on screen, and submit. Filing is yours to do, on your own credentials, which is the only arrangement under which a tool can honestly say it never files something you have not seen.